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Brown J, Crivello J, O’Neill RJ. An updated genetic map of Peromyscus with chromosomal assignment of linkage groups . Mamm Genome. 2018 Jun;29(5-6):344-352. doi: 10.1007/s00335-018-9754-7. Epub 2018 Jun 15. PubMed PMID: 29947964.
Mathiowetz AJ, Baple E, Russo AJ, Coulter AM, Carrano E, Brown JD, Jinks RN, Crosby AH, Campellone KG. An Amish founder mutation disrupts a PI(3)P-WHAMM-Arp2/3 complex-driven autophagosomal remodeling pathway . Mol Biol Cell. 2017 Sep 15;28(19):2492-2507. doi: 10.1091/mbc.E17-01-0022. Epub 2017 Jul 18. PubMed PMID: 28720660; PubMed Central PMCID: PMC5597322.
Ramos, É., Cardoso, A. L., Brown, J. D ., Marques, D. F., Fantinatti, B. E., Cabral-de-Mello, D. C., Oliveira, R. A., O’Neill, R. J., Martins, C. The repetitive DNA element BncDNA, enriched in the B chromosome of the cichlid fish Astatotilapia latifasciata, transcribes a potentially noncoding RNA . Chromosoma, 2016, May 12. PMID: 27169573 DOI:10.1007/s00412-016-0601-x
Mark S. Longo*, Judy D. Brown *, Chu Zhang, Michael J. O’Neill, and Rachel J. O’Neill (2015). A novel mammalian SINE, derived from 28S rRNA, has been recently active in primates. Genome Biology and Evolution. 10.1093/gbe/evv015 * These authors contributed equally to this work
Yuichiro Itoh, Ryan Mackie, Kathy Kampf, Shelly Domadia, Judy D Brown , Rachel O’Neill, andArthur P Arnold (2015). Four Core Genotypes mouse model: localization of the Sry transgene and bioassay for testicular hormone levels. BMC Res Notes, 2015 vol. 8 (1) p. 9005.
Brown, J. D. , O’Neill, R. J. (2014). The Evolution of Centromeric DNA Sequences. In: eLS. JohnWiley & Sons, Ltd: Chichester.Germain, N. D., Chen, P.-F., Plocik, A. M., Glatt-Deeley, H., Brown, J. D. , Fink, J. J., Bolduc, K. A.,Robinson, T. M., Levine, E. S., Reiter, L. T., Graveley, B. R., Lalande, M., Chamberlain, S. J. 2014.Gene expression analysis of human induced pluripotent stem cell-derived neurons carrying copy number variants of chromosome 15q11-q13.1. Molecular Autism, 5:44.
Kenney-Hunt, J., Lewandowski, A., Glenn, T., Glenn, J. L., Tsyusko, O. V., O’Neill, R. J., Brown, J. D. , Ramsdell, C. M., Nguyen, Q., Phan, T., Shorter, K. R., Dewey, M. J., Szalai, G., Vrana, P. B.,Felder, M. R. (2014). A genetic map of Peromyscus with chromosomal assignment of linkage groups (a Peromyscus genetic map). Mammalian Genome 25 (3-4), 160-179.
Lindsay J, Carone DM, Brown J , Hall L, Qureshi S, Mitchell SE, Jannetty N, Hannon G, Renfree M,Pask A, O Neill M, O Neill R. (2012). Unique small RNA signatures uncovered in the tammar wallaby genome. BMC Genomics. 13(1):559
Judith D. Brown , Vanessa Piccuillo, Rachel J. O’Neill (2012). Retroelement Demethylation Associated with Abnormal Placentation in Mus musculus X Mus caroli Hybrids Biology ofReproduction. 86(3):88.Brown, J.D. , S.E. Mitchell and R. J. O’Neill. (2012). Making a long story short: noncoding RNAs and chromosome change. Heredity 108 : 42-49.Ferreri GC, Brown JD , Obergfell C, Jue N, Finn CE, O’Neill MJ, O’Neill RJ. (2011). Recent Amplification of the Kangaroo Endogenous Retrovirus, KERV, Limited to the Centromere . J Virol.85(10):4761-71.
Brown, J. , Carone, D., Flynn, B., Finn, C., Mlynarski, E., O’Neill, R. Centromere conversion and retention in somatic cell hybrids . (2011) Cytogenetic and Genome Research. 134(3):182-90.Brown, J.D. and O’Neill, R. J. (2010). Chromosomes, Conflict and Epigenetics: chromosomal speciation revisited . Annual Review of Genomics and Human Genetics, Volume 11, September.Brown, J.D. and O’Neill, R. J. (2009). The mysteries of chromosome evolution in gibbons:methylation is a prime suspect . PLoS Genet June; 5(6).Brown J.D. , Golden D, O’Neill, R. J. (2008). Methylation perturbations in retroelements within the genome of a Mus hybrid correlate with double minute chromosome formation. Genomics. March91(3), 267-273.Smilowitz H.M., Weissenberger J., Weis J., Brown J.D. , O’Neill R.J., Laissue J.A. (2007). Orthotopic transplantation of v-src- expressing glioma cell lines into immunocompetent mice: establishment of anew transplantable in vivo model for malignant glioma. J. Neurosurg. Apr;106(4):652-9.
Denise R. Carvalho-Silva, Rachel J.W. O’Neill, Judith D. Brown , Kim Huynh, Paul D. Waters,Andrew J. Pask, Margaret L. Delbridge and Jennifer A. Marshall Graves. (2004) Molecular characterization and evolution of X and Y-borne ATRX homologues in American marsupials. Chromosome Research (12) 795-804.
Brown, J.D. , Strubuncelj, M., Giardina, C. & O’Neill, R.J. Interspecific hybridization induced amplification of Mdm2 on double minutes in a Mus hybrid. Cytogenetics and Genome Research (98)184-188.Brown, J.D. (2001). Spatial ability as a predictor of karyotyping ability. The Journal of the Association of Genetic Technologists, 27(4), 135-139.Williams, G.S., Brown, J.D. and Keagle, M.B. (2000). The development of a post-baccalaureate certificate program in molecular diagnostics. Journal of Molecular Diagnostics, 2(4), 174-177.
Keagle, M.B. and Brown, J.D. (1999). “DNA, Chromosomes, and Cell Division ” in Gersen S.L. andKeagle M.B. Principles of Clinical Cytogenetics. Tottawa, New Jersey: The Humana Press Inc.
Aistars, M.A., Brown J.D. , Jones, H.D. and Stein, C.K. (1996). Homologous recombination eventfrom paternal meiosis I identified by prenatal testing. Applied Cytogenetics, 22(3), 87.